Variant report

Variant	rs7530001
Chromosome Location	chr1:56344174-56344175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2671236	1.00[AMR][1000 genomes]
rs2671244	1.00[AMR][1000 genomes]
rs2819480	1.00[AMR][1000 genomes]
rs3122557	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56341600-56344200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56342200-56345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56342600-56344200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:56342600-56344400	Weak transcription	Ovary	ovary
5	chr1:56342600-56344800	Enhancers	Fetal Intestine Small	intestine
6	chr1:56343000-56344600	Enhancers	Fetal Intestine Large	intestine
7	chr1:56343200-56344200	Enhancers	Fetal Lung	lung
8	chr1:56343600-56344800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:56343800-56350400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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