Variant report

Variant	rs7531080
Chromosome Location	chr1:69348043-69348044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7533432	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871131	chr1:69323222-69427276	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
2	nsv870641	chr1:69338706-69446281	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69347000-69348200	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr1:69347000-69348200	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr1:69347000-69348600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:69347000-69348800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:69347400-69349000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:69348000-69348600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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