Variant report

Variant	rs7531706
Chromosome Location	chr1:216197599-216197600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10449314	0.91[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs10864223	0.89[AFR][1000 genomes]
rs12081117	0.85[AFR][1000 genomes]
rs12095215	0.85[AFR][1000 genomes]
rs12121718	0.85[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12123090	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12126638	0.86[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs12128250	0.80[CEU][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes]
rs12129791	0.86[CEU][hapmap]
rs12142380	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738949	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12759256	0.93[AFR][1000 genomes]
rs1436777	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1561175	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17025886	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2317936	0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs2813730	0.81[EUR][1000 genomes]
rs28505495	0.85[AFR][1000 genomes]
rs34510478	0.83[ASN][1000 genomes]
rs34819906	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3856186	0.84[MEX][hapmap]
rs55839123	0.86[EUR][1000 genomes]
rs565454	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs6540927	0.96[YRI][hapmap]
rs67417484	0.89[EUR][1000 genomes]
rs678697	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs67994803	0.84[EUR][1000 genomes]
rs72744680	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7412389	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428599	chr1:216086224-216267211	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv873172	chr1:216144827-216281673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv873173	chr1:216151789-216204488	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv873174	chr1:216151789-216211989	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv873175	chr1:216188698-216219781	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7531706	TRAF5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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