Variant report

Variant	rs7531875
Chromosome Location	chr1:94578132-94578133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94573501..94575707-chr1:94575840..94578707,2	MCF-7	breast:
2	chr1:94569570..94572395-chr1:94575385..94578285,2	MCF-7	breast:
3	chr1:94571469..94574892-chr1:94577789..94583222,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4147813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72960478	0.87[AMR][1000 genomes]
rs7524782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807674	chr1:94549175-94588191	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94564600-94591800	Weak transcription	Right Atrium	heart
2	chr1:94567400-94585400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:94571000-94583000	Weak transcription	Pancreas	Pancrea
4	chr1:94571800-94581400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:94572400-94578600	Weak transcription	Fetal Kidney	kidney
6	chr1:94574600-94579800	Enhancers	Placenta	Placenta
7	chr1:94574600-94583000	Weak transcription	Brain Substantia Nigra	brain
8	chr1:94575000-94579600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:94575600-94579400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:94575800-94579000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:94575800-94583000	Weak transcription	Left Ventricle	heart
12	chr1:94576400-94581800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:94576800-94579400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:94576800-94582000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr1:94577000-94578800	Weak transcription	Fetal Heart	heart
16	chr1:94577000-94581200	Weak transcription	Liver	Liver
17	chr1:94577000-94581200	Weak transcription	Spleen	Spleen
18	chr1:94577200-94579000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:94577200-94582000	Weak transcription	Lung	lung
20	chr1:94577400-94579400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:94577400-94581400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr1:94577600-94578600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:94577600-94578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:94577600-94579000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:94577600-94579000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:94577600-94579000	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:94577600-94579400	Weak transcription	Fetal Thymus	thymus
28	chr1:94577600-94581200	Enhancers	HepG2	liver
29	chr1:94577600-94582000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:94578000-94578400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:94578000-94578400	Weak transcription	H9 Cell Line	embryonic stem cell

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