Variant report

Variant	rs7532263
Chromosome Location	chr1:193292085-193292086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4657853	1.00[AMR][1000 genomes]
rs56082148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6685973	1.00[AMR][1000 genomes]
rs74130944	0.83[AFR][1000 genomes]
rs74130950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74130964	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538408	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1001174	chr1:193186758-193363372	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv997891	chr1:193271839-193566441	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193289200-193292200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:193289200-193292400	Enhancers	NHEK	skin
3	chr1:193289400-193292400	Enhancers	HMEC	breast
4	chr1:193290400-193292200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:193290400-193292200	Enhancers	NH-A	brain
6	chr1:193290400-193292400	Enhancers	NHDF-Ad	bronchial
7	chr1:193290400-193292400	Enhancers	Osteobl	bone
8	chr1:193290400-193292800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:193290600-193292400	Enhancers	HUVEC	blood vessel
10	chr1:193291000-193292600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:193291200-193292200	Enhancers	NHLF	lung
12	chr1:193291400-193292200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:193291400-193294800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:193291800-193292400	Genic enhancers	HSMM	muscle
15	chr1:193292000-193292200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links