Variant report

Variant	rs7532784
Chromosome Location	chr1:85609906-85609907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11161536	0.88[YRI][hapmap]
rs11161537	0.89[YRI][hapmap]
rs11161543	1.00[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes]
rs11161544	0.88[YRI][hapmap]
rs12026642	1.00[CEU][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes]
rs12087427	0.89[YRI][hapmap]
rs4907140	0.90[CEU][hapmap]
rs61136219	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85594800-85614400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:85603800-85614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:85603800-85615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:85603800-85618800	Weak transcription	Gastric	stomach
5	chr1:85603800-85632200	Weak transcription	Fetal Lung	lung
6	chr1:85604800-85611800	Weak transcription	Placenta	Placenta
7	chr1:85608600-85614200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:85608600-85655200	Weak transcription	Aorta	Aorta
9	chr1:85608800-85610200	Weak transcription	Pancreas	Pancrea
10	chr1:85608800-85629200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:85609200-85610200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:85609200-85610400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:85609200-85614200	Weak transcription	Left Ventricle	heart
14	chr1:85609400-85610400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:85609400-85610600	Enhancers	Fetal Intestine Small	intestine
16	chr1:85609400-85611400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:85609600-85610400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:85609800-85610400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:85609800-85610400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr1:85609800-85610400	Enhancers	HepG2	liver
21	chr1:85609800-85610600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr1:85609800-85610600	Enhancers	Small Intestine	intestine
23	chr1:85609800-85611400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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