Variant report

Variant	rs7533324
Chromosome Location	chr1:165387533-165387534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10918172	1.00[CEU][hapmap];0.92[GIH][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs17469527	0.87[EUR][1000 genomes]
rs17469611	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs283697	0.85[CEU][hapmap]
rs283698	0.89[ASW][hapmap];0.85[CEU][hapmap]
rs61800575	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6670374	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7533324	B4GALT3	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:165377800-165389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:165378400-165391200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:165379600-165389000	Weak transcription	Psoas Muscle	Psoas
9	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
10	chr1:165381200-165389200	Strong transcription	Fetal Muscle Leg	muscle
11	chr1:165382600-165389200	Weak transcription	Adipose Nuclei	Adipose
12	chr1:165382800-165389000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr1:165385600-165393600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:165386400-165387600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:165386400-165388600	Weak transcription	Left Ventricle	heart
16	chr1:165386400-165388600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:165386600-165388600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:165386600-165389000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:165386600-165392000	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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