Variant report

Variant	rs7533477
Chromosome Location	chr1:213190218-213190219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr1:213190203-213191679	K562	blood:	n/a	chr1:213190217-213190226 chr1:213191411-213191420
2	TBP	chr1:213190197-213191248	K562	blood:	n/a	n/a
3	RPC155	chr1:213189642-213190462	K562	blood:	n/a	n/a
4	ARID3A	chr1:213190196-213191626	K562	blood:	n/a	n/a
5	POLR2A	chr1:213188111-213190310	K562	blood:	n/a	n/a
6	TBL1XR1	chr1:213190188-213190361	K562	blood:	n/a	n/a
7	MXI1	chr1:213190216-213190354	K562	blood:	n/a	n/a
8	ZNF384	chr1:213189950-213191193	K562	blood:	n/a	n/a
9	JUND	chr1:213190114-213190314	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213189838..213192290-chr1:213223097..213225633,3	K562	blood:
2	chr1:213187916..213191474-chr1:213223097..213226356,5	K562	blood:
3	chr1:213172351..213174511-chr1:213188133..213190817,2	K562	blood:
4	chr1:212780951..212783989-chr1:213187661..213190726,3	K562	blood:
5	chr1:213188825..213190728-chr1:213222994..213225299,2	MCF-7	breast:
6	chr1:213189175..213191478-chr1:213248143..213250768,2	K562	blood:
7	chr1:213189175..213191478-chr1:213247588..213250768,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ANGEL2	TF binding region
ENSG00000174606	Chromatin interaction
ENSG00000162772	Chromatin interaction
ENSG00000136643	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17020073	1.00[AMR][1000 genomes]
rs17020325	1.00[AMR][1000 genomes]
rs35494356	1.00[AMR][1000 genomes]
rs55900853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57998386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60147631	1.00[AMR][1000 genomes]
rs60170453	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61547363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74139107	1.00[AMR][1000 genomes]
rs74140541	1.00[AMR][1000 genomes]
rs74140549	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140559	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520957	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213187600-213190400	Active TSS	K562	blood
2	chr1:213189400-213198600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:213189600-213190400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:213189800-213190400	Enhancers	Hela-S3	cervix
5	chr1:213189800-213190600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:213189800-213190800	Weak transcription	HepG2	liver
7	chr1:213189800-213191000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:213189800-213191200	Enhancers	A549	lung
9	chr1:213189800-213194000	Weak transcription	Spleen	Spleen
10	chr1:213190000-213190400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:213190200-213190400	Flanking Active TSS	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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