Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1113230	0.85[JPT][hapmap]
rs11801920	0.87[ASN][1000 genomes]
rs11810310	0.87[ASN][1000 genomes]
rs1333144	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1412795	0.87[ASN][1000 genomes]
rs1576978	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16863302	0.87[ASN][1000 genomes]
rs1889111	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1953094	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953095	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953096	0.86[ASN][1000 genomes]
rs1984066	0.87[ASN][1000 genomes]
rs2095134	0.85[CEU][hapmap]
rs2104912	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2151245	0.85[CEU][hapmap]
rs35102909	0.82[EUR][1000 genomes]
rs4656759	0.87[ASN][1000 genomes]
rs60646864	0.87[ASN][1000 genomes]
rs61225891	0.87[ASN][1000 genomes]
rs6700678	0.88[CEU][hapmap]
rs7532724	0.92[ASN][1000 genomes]
rs7554931	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170312400-170319400	Weak transcription	Fetal Heart	heart

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