Variant report

Variant	rs7534571
Chromosome Location	chr1:47847279-47847280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47797800..47800038-chr1:47846235..47848249,2	MCF-7	breast:
2	chr1:47799650..47801190-chr1:47846011..47848382,2	K562	blood:

Variant related genes	Relation type
ENSG00000162368	Chromatin interaction

rs_ID	r²[population]
rs11211508	1.00[YRI][hapmap]
rs11211520	1.00[YRI][hapmap]
rs11582877	1.00[YRI][hapmap]
rs12039726	1.00[YRI][hapmap]
rs3088062	1.00[YRI][hapmap]
rs4600090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs6660321	1.00[YRI][hapmap]
rs6690084	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs7532148	1.00[YRI][hapmap]

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47800600-47854600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:47801000-47850800	Weak transcription	NHEK	skin
3	chr1:47814800-47850600	Weak transcription	Aorta	Aorta
4	chr1:47824000-47851000	Weak transcription	Stomach Mucosa	stomach
5	chr1:47824000-47853800	Weak transcription	Psoas Muscle	Psoas
6	chr1:47827800-47854800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:47832200-47854200	Weak transcription	Esophagus	oesophagus
8	chr1:47833200-47852000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:47833600-47854200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:47833600-47854200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:47834000-47847400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:47834000-47847600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:47834000-47847600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:47834000-47849200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:47834000-47849200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:47834000-47849200	Strong transcription	Dnd41	blood
17	chr1:47834000-47849400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:47834200-47847600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr1:47834200-47847600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr1:47834200-47848000	Strong transcription	HSMM	muscle
21	chr1:47834200-47849200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:47834200-47849400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr1:47834200-47849400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr1:47834200-47849400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:47834200-47850200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr1:47835200-47853400	Weak transcription	NHLF	lung
27	chr1:47835200-47853600	Weak transcription	Fetal Brain Male	brain
28	chr1:47835400-47849800	Weak transcription	Fetal Heart	heart
29	chr1:47835400-47853200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:47836000-47850200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:47836400-47854400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:47836600-47852800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:47836600-47854800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:47837200-47847600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:47837200-47853200	Weak transcription	A549	lung
36	chr1:47839200-47849400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:47839400-47854200	Weak transcription	Pancreas	Pancrea
38	chr1:47839400-47854200	Weak transcription	Right Ventricle	heart
39	chr1:47840000-47853400	Weak transcription	Fetal Intestine Small	intestine
40	chr1:47840200-47854200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:47840400-47848400	Strong transcription	Primary B cells from cord blood	blood
42	chr1:47841000-47850800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:47841000-47852000	Weak transcription	Brain Substantia Nigra	brain
44	chr1:47841400-47854200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:47841400-47854200	Weak transcription	Brain Angular Gyrus	brain
46	chr1:47841600-47849400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr1:47841600-47850600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr1:47841600-47854800	Weak transcription	Brain Hippocampus Middle	brain
49	chr1:47842400-47849200	Genic enhancers	K562	blood
50	chr1:47842600-47847600	Strong transcription	GM12878-XiMat	blood

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