Variant report

Variant	rs7534847
Chromosome Location	chr1:78690029-78690030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7542998	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78688000-78691200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:78688000-78691400	Enhancers	Hela-S3	cervix
3	chr1:78688400-78690200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:78688400-78690400	Enhancers	Osteobl	bone
5	chr1:78689400-78692200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:78689600-78692800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:78689800-78690200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr1:78689800-78690800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:78689800-78690800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:78689800-78691000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:78689800-78692400	Enhancers	Liver	Liver
12	chr1:78689800-78697800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:78689800-78702400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:78689800-78703000	Weak transcription	Pancreas	Pancrea
15	chr1:78690000-78690400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:78690000-78690400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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