Variant report

Variant	rs7534997
Chromosome Location	chr1:93076470-93076471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93072009..93073923-chr1:93074325..93077014,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6603998	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6659031	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6668381	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7368372	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7368374	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9659774	0.85[AMR][1000 genomes]
rs9659783	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9660882	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93014800-93100200	Weak transcription	Right Ventricle	heart
2	chr1:93026000-93091800	Weak transcription	Hela-S3	cervix
3	chr1:93030000-93082200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:93034400-93081000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:93050200-93081200	Weak transcription	HSMMtube	muscle
6	chr1:93050600-93082400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:93050600-93082600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:93051800-93082000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:93052000-93119400	Weak transcription	NHEK	skin
10	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:93054800-93089200	Weak transcription	HSMM	muscle
12	chr1:93055000-93080800	Weak transcription	Aorta	Aorta
13	chr1:93055000-93082600	Weak transcription	Pancreas	Pancrea
14	chr1:93055000-93083000	Weak transcription	Fetal Lung	lung
15	chr1:93055000-93100200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:93055200-93082600	Weak transcription	Lung	lung
17	chr1:93055800-93081000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:93055800-93082200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:93055800-93082200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:93055800-93085200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:93061800-93081200	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:93062000-93118800	Weak transcription	HMEC	breast
23	chr1:93063000-93100600	Weak transcription	Gastric	stomach
24	chr1:93064400-93100800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr1:93064600-93083000	Weak transcription	Osteobl	bone
26	chr1:93065200-93101000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:93065800-93119600	Weak transcription	NH-A	brain
29	chr1:93066800-93103000	Weak transcription	NHDF-Ad	bronchial
30	chr1:93066800-93114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:93067000-93080600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:93067000-93088400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:93067200-93101000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:93067400-93100800	Weak transcription	Brain Angular Gyrus	brain
35	chr1:93068200-93100600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr1:93068600-93082800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:93068600-93082800	Weak transcription	NHLF	lung
38	chr1:93068600-93100400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:93068600-93112600	Weak transcription	Brain Substantia Nigra	brain
40	chr1:93068800-93082000	Weak transcription	Primary B cells from cord blood	blood
41	chr1:93068800-93083200	Weak transcription	Fetal Kidney	kidney
42	chr1:93068800-93103200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:93069400-93082400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr1:93069400-93104600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:93070000-93078400	Weak transcription	Fetal Stomach	stomach
47	chr1:93070000-93080600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:93070000-93081000	Weak transcription	Fetal Intestine Small	intestine
49	chr1:93070000-93083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:93070000-93083600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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