Variant report

Variant	rs7535566
Chromosome Location	chr1:171183965-171183966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171182864..171185763-chr1:171186408..171189341,2	MCF-7	breast:
2	chr1:171177619..171179300-chr1:171182219..171184780,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10798263	0.95[EUR][1000 genomes]
rs10798271	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912537	0.95[EUR][1000 genomes]
rs10912538	0.95[EUR][1000 genomes]
rs10912552	0.95[EUR][1000 genomes]
rs10912593	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810116	0.95[EUR][1000 genomes]
rs12061191	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12078610	0.85[ASN][1000 genomes]
rs12092242	0.95[EUR][1000 genomes]
rs12567600	0.95[EUR][1000 genomes]
rs12758140	0.94[EUR][1000 genomes]
rs2205724	0.95[EUR][1000 genomes]
rs28369838	0.95[EUR][1000 genomes]
rs28369839	0.95[EUR][1000 genomes]
rs28369841	0.95[EUR][1000 genomes]
rs3754495	0.84[EUR][1000 genomes]
rs6662773	0.95[EUR][1000 genomes]
rs6692347	0.95[EUR][1000 genomes]
rs7513579	0.95[EUR][1000 genomes]
rs7518899	0.95[EUR][1000 genomes]
rs7535771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539549	0.94[EUR][1000 genomes]
rs7550060	0.95[EUR][1000 genomes]
rs7555557	0.95[EUR][1000 genomes]
rs981460	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831882	chr1:171166224-171326083	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1817255	chr1:171170733-171185865	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171166000-171184000	Weak transcription	Gastric	stomach
2	chr1:171167200-171187800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:171169800-171189800	Weak transcription	Right Atrium	heart
4	chr1:171178200-171187200	Weak transcription	Aorta	Aorta
5	chr1:171179800-171187600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:171179800-171187800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:171180600-171187000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:171181000-171187800	Weak transcription	Fetal Lung	lung
9	chr1:171182800-171184000	Weak transcription	Spleen	Spleen
10	chr1:171182800-171187800	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:171183000-171187200	Weak transcription	Adipose Nuclei	Adipose
12	chr1:171183000-171189800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:171183200-171184000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:171183200-171184800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:171183400-171184000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:171183400-171186800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:171183400-171189800	Weak transcription	Left Ventricle	heart
18	chr1:171183600-171187200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:171183600-171187200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:171183600-171187800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:171183800-171186800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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