Variant report

Variant	rs7536271
Chromosome Location	chr1:57935122-57935123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11207041	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12407896	0.81[EUR][1000 genomes]
rs2406067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4607907	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6686072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57931000-57935200	Weak transcription	Fetal Brain Female	brain
2	chr1:57932800-57942400	Weak transcription	Stomach Mucosa	stomach
3	chr1:57933000-57937000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:57933200-57935800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:57933200-57937000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:57933600-57937000	Enhancers	NHDF-Ad	bronchial
7	chr1:57933800-57936400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:57933800-57936400	Enhancers	NH-A	brain
9	chr1:57934000-57936600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:57934400-57936200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:57934400-57936800	Enhancers	Hela-S3	cervix
12	chr1:57934600-57935200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:57934600-57936000	Enhancers	Right Atrium	heart
14	chr1:57934800-57935200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:57934800-57935200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:57934800-57935800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:57934800-57936000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr1:57934800-57936400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:57934800-57936400	Enhancers	Fetal Kidney	kidney
20	chr1:57934800-57936600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr1:57934800-57936600	Enhancers	NHLF	lung
22	chr1:57935000-57935800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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