Variant report

Variant	rs7536460
Chromosome Location	chr1:171493321-171493322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10753120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10753129	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1980512	0.96[YRI][hapmap]
rs2015996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2038042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2272809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2294289	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs235468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs235486	0.81[ASN][1000 genomes]
rs235492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs235493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs235496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs235497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs235501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs235508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs235509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs235510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs235883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs235905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs235906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs235907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2421841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs34230913	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4384265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4916232	0.80[AMR][1000 genomes]
rs4916389	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4916394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7514441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7523355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs7531984	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7538827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs760644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs764206	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs958021	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv465639	chr1:171459507-171545051	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv548190	chr1:171459507-171545051	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7536460	DNM3OS	cis	Artery Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171475800-171524400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:171476000-171498800	Weak transcription	Fetal Heart	heart
3	chr1:171478800-171497800	Weak transcription	Stomach Mucosa	stomach
4	chr1:171481000-171528000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:171481200-171495600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:171481200-171518800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:171481200-171519200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:171481200-171519600	Strong transcription	Dnd41	blood
9	chr1:171481200-171520000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr1:171481200-171522400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:171481400-171519200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:171481400-171519800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:171481400-171520000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:171481400-171522800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:171481600-171494600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:171481600-171519200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:171481600-171520600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr1:171481800-171495000	Strong transcription	HUVEC	blood vessel
19	chr1:171481800-171520000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr1:171481800-171520600	Strong transcription	Placenta	Placenta
21	chr1:171482000-171495600	Strong transcription	HMEC	breast
22	chr1:171482000-171519800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:171482000-171520000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:171482000-171520400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:171482000-171520400	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr1:171482000-171522000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:171482000-171523000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:171482000-171524400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:171482200-171493400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:171482200-171494800	Strong transcription	Adipose Nuclei	Adipose
31	chr1:171482200-171495600	Strong transcription	Hela-S3	cervix
32	chr1:171482200-171496600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr1:171482200-171506400	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr1:171482200-171508200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:171482200-171512000	Strong transcription	Primary T cells from cord blood	blood
36	chr1:171482200-171518400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:171482200-171519200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:171482200-171520000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:171482200-171520000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr1:171482200-171520400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr1:171482200-171520600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr1:171482200-171520600	Strong transcription	Fetal Thymus	thymus
43	chr1:171482200-171541800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr1:171482400-171495600	Strong transcription	Osteobl	bone
45	chr1:171482400-171503200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:171482400-171520000	Strong transcription	Liver	Liver
47	chr1:171482400-171520400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr1:171482600-171520600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:171483000-171495200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr1:171483200-171495000	Strong transcription	HepG2	liver

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