Variant report

Variant	rs7536740
Chromosome Location	chr1:168472921-168472922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12744295	1.00[AFR][1000 genomes]
rs12753892	1.00[AFR][1000 genomes]
rs34310944	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014626	chr1:168441288-168642731	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535196	chr1:168441288-168642731	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1011821	chr1:168441488-168642592	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv535197	chr1:168441488-168642592	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1008852	chr1:168449940-168643905	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv535198	chr1:168449940-168643905	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1007846	chr1:168449940-168687265	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168454600-168475200	Weak transcription	Small Intestine	intestine
2	chr1:168462000-168473400	Weak transcription	Pancreas	Pancrea
3	chr1:168462800-168473600	Weak transcription	Psoas Muscle	Psoas
4	chr1:168465800-168473400	Weak transcription	Liver	Liver
5	chr1:168467800-168473000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:168467800-168475200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:168468000-168473600	Weak transcription	NHLF	lung
8	chr1:168468200-168473400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:168468200-168476400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:168468400-168473400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:168468800-168473800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:168468800-168478600	Weak transcription	HepG2	liver
13	chr1:168469200-168476800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:168469400-168473000	Weak transcription	Hela-S3	cervix
15	chr1:168469400-168473000	Weak transcription	Osteobl	bone
16	chr1:168469400-168475400	Weak transcription	A549	lung
17	chr1:168469600-168473000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:168469600-168473200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:168469800-168473200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:168469800-168473600	Weak transcription	Fetal Intestine Large	intestine
21	chr1:168470000-168475600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr1:168470200-168474800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:168470600-168476000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:168470800-168473600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:168470800-168473600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr1:168470800-168473800	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:168471200-168473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:168471200-168473400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:168471600-168473600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr1:168471800-168473000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr1:168471800-168474400	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr1:168472000-168483000	Weak transcription	Aorta	Aorta
33	chr1:168472400-168473400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr1:168472400-168474800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:168472400-168475400	Enhancers	NHDF-Ad	bronchial
36	chr1:168472600-168483200	Weak transcription	Spleen	Spleen
37	chr1:168472800-168473200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:168472800-168473800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:168472800-168474000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:168472800-168474000	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr1:168472800-168474200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:168472800-168477200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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