Variant report

Variant	rs7537472
Chromosome Location	chr1:77896809-77896810
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12407481	0.84[YRI][hapmap]
rs6658302	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7545638	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1848735	chr1:77885282-77918347	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv871605	chr1:77889505-77918347	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77872200-77913800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:77888000-77897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:77893800-77902600	Weak transcription	Osteobl	bone
4	chr1:77893800-77903600	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:77894000-77897000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:77894000-77897600	Weak transcription	Brain Substantia Nigra	brain
7	chr1:77894200-77905200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:77894200-77912400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:77894200-77912600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:77895200-77898800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:77895200-77898800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:77895200-77899000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:77895200-77899400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:77895200-77901400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr1:77895400-77897000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:77895400-77902000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:77895800-77898000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:77896200-77897800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:77896400-77897200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:77896400-77897200	Enhancers	HSMM	muscle
21	chr1:77896400-77897400	Enhancers	NHDF-Ad	bronchial
22	chr1:77896400-77898000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:77896400-77898200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr1:77896600-77897000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:77896600-77897000	Enhancers	Aorta	Aorta
26	chr1:77896600-77897000	Enhancers	HSMMtube	muscle
27	chr1:77896600-77897200	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr1:77896600-77897200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr1:77896600-77897200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr1:77896600-77897400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:77896600-77897400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:77896600-77897600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:77896600-77897600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:77896600-77897600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr1:77896600-77897800	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr1:77896600-77897800	Enhancers	Primary B cells from peripheral blood	blood
37	chr1:77896600-77897800	Enhancers	Primary hematopoietic stem cells	blood
38	chr1:77896600-77898000	Enhancers	HMEC	breast
39	chr1:77896600-77898800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:77896800-77897000	Enhancers	Primary B cells from cord blood	blood
41	chr1:77896800-77897000	Enhancers	Brain Cingulate Gyrus	brain
42	chr1:77896800-77897200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:77896800-77897200	Enhancers	NHLF	lung
44	chr1:77896800-77897400	Enhancers	HUVEC	blood vessel
45	chr1:77896800-77897600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr1:77896800-77897800	Enhancers	Brain Anterior Caudate	brain

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