Variant report

Variant	rs7538559
Chromosome Location	chr1:173372827-173372828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173371854..173373491-chr1:173793929..173795469,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11799616	0.89[ASN][1000 genomes]
rs11809193	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11811598	0.80[ASN][1000 genomes]
rs12562415	0.83[ASN][1000 genomes]
rs57231379	0.80[ASN][1000 genomes]
rs6678064	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173347200-173375000	Weak transcription	Spleen	Spleen
2	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
3	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:173354800-173376000	Weak transcription	Primary B cells from cord blood	blood
5	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
6	chr1:173362600-173381200	Weak transcription	Ovary	ovary
7	chr1:173362800-173374400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:173362800-173375800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
11	chr1:173363000-173374200	Weak transcription	HMEC	breast
12	chr1:173363000-173374400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:173363000-173375800	Weak transcription	K562	blood
14	chr1:173363000-173379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:173363400-173374200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
17	chr1:173364000-173374200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:173364000-173376000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
20	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
21	chr1:173365600-173375800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:173365600-173376000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:173367200-173375800	Weak transcription	Thymus	Thymus
24	chr1:173367800-173379600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr1:173369200-173376000	Weak transcription	Lung	lung
26	chr1:173370600-173378600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:173370800-173376000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:173370800-173379400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:173370800-173382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:173370800-173389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:173370800-173389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:173370800-173389400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr1:173370800-173389400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr1:173370800-173389400	Weak transcription	Aorta	Aorta
35	chr1:173371000-173374400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:173371400-173375800	Enhancers	GM12878-XiMat	blood
37	chr1:173371400-173378200	Weak transcription	Primary T cells from cord blood	blood
38	chr1:173371800-173375200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:173372000-173373200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr1:173372000-173373400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:173372000-173374200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:173372000-173374600	Weak transcription	Colon Smooth Muscle	Colon
43	chr1:173372000-173375600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr1:173372000-173375800	Weak transcription	Psoas Muscle	Psoas
45	chr1:173372000-173398600	Weak transcription	Brain Substantia Nigra	brain
46	chr1:173372400-173375800	Weak transcription	Left Ventricle	heart
47	chr1:173372400-173376000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:173372600-173375800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr1:173372800-173374200	Weak transcription	HSMMtube	muscle

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