Variant report

Variant	rs7538584
Chromosome Location	chr1:152789712-152789713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11205115	1.00[EUR][1000 genomes]
rs11800110	1.00[CEU][hapmap]
rs11804354	1.00[CEU][hapmap]
rs11804404	1.00[CEU][hapmap]
rs11804419	1.00[CEU][hapmap]
rs11805896	1.00[CEU][hapmap]
rs11809092	1.00[CEU][hapmap]
rs11810194	1.00[EUR][1000 genomes]
rs12073467	1.00[CEU][hapmap]
rs16834574	1.00[CEU][hapmap]
rs16834582	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs16834595	1.00[CEU][hapmap]
rs16834596	1.00[CEU][hapmap]
rs16834611	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs16834719	1.00[CEU][hapmap]
rs16834732	1.00[CEU][hapmap]
rs2339389	1.00[EUR][1000 genomes]
rs2339390	1.00[EUR][1000 genomes]
rs2339393	1.00[EUR][1000 genomes]
rs3906158	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4378153	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs6673420	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs6674372	1.00[CEU][hapmap]
rs6684782	1.00[CEU][hapmap]
rs6699386	1.00[CEU][hapmap]
rs6703505	1.00[CEU][hapmap]
rs73019084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021166	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021168	1.00[EUR][1000 genomes]
rs73021171	1.00[EUR][1000 genomes]
rs7519200	1.00[EUR][1000 genomes]
rs7531043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540269	1.00[EUR][1000 genomes]
rs7541578	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7550874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv428521	chr1:152663153-152831578	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv947325	chr1:152670204-152793272	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv999918	chr1:152749733-152861866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1009885	chr1:152762750-152851273	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152788600-152792800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:152789400-152790000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:152789600-152790000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:152789600-152790000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:152789600-152790000	Enhancers	HMEC	breast
6	chr1:152789600-152790000	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links