Variant report

Variant	rs7538643
Chromosome Location	chr1:168954234-168954235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12095208	0.86[ASN][1000 genomes]
rs2900885	0.86[ASN][1000 genomes]
rs6657882	0.86[ASN][1000 genomes]
rs6669068	0.86[ASN][1000 genomes]
rs6674703	0.86[ASN][1000 genomes]
rs6682463	0.86[ASN][1000 genomes]
rs73028640	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553605	0.86[ASN][1000 genomes]
rs9725298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168949800-168959200	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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