The 2.0 version of rSNPBase

Variant report

Variant rs754080
Chromosome Location chr12:123325296-123325297
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:123321600-123325600 Weak transcription Placenta Placenta
2 chr12:123321600-123325600 Weak transcription Osteobl bone
3 chr12:123321600-123326400 Weak transcription Stomach Smooth Muscle stomach
4 chr12:123321600-123327200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr12:123321600-123332800 Weak transcription Ovary ovary
6 chr12:123321600-123333000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr12:123321800-123325800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr12:123321800-123325800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr12:123321800-123325800 Enhancers Colonic Mucosa Colon
10 chr12:123321800-123326200 Enhancers Brain Anterior Caudate brain
11 chr12:123321800-123336800 Weak transcription Aorta Aorta
12 chr12:123322000-123332400 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr12:123322400-123325800 Weak transcription Fetal Heart heart
14 chr12:123322400-123329000 Weak transcription Thymus Thymus
15 chr12:123322600-123325400 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr12:123322600-123332600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr12:123322800-123326200 Enhancers HepG2 liver
18 chr12:123322800-123327200 Enhancers Liver Liver
19 chr12:123322800-123329600 Weak transcription Spleen Spleen
20 chr12:123322800-123334000 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr12:123322800-123334400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr12:123322800-123339600 Weak transcription Dnd41 blood
23 chr12:123322800-123353000 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr12:123323000-123326200 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr12:123323000-123326600 Weak transcription K562 blood
26 chr12:123323000-123330400 Genic enhancers Primary B cells from peripheral blood blood
27 chr12:123323200-123325600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr12:123323200-123326800 Genic enhancers NHEK skin
29 chr12:123323200-123340800 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr12:123323200-123352000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr12:123323400-123335200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr12:123323600-123325400 Strong transcription Fetal Thymus thymus
33 chr12:123323600-123325800 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
34 chr12:123323600-123326200 Strong transcription Fetal Stomach stomach
35 chr12:123323600-123326600 Strong transcription Primary T cells from cord blood blood
36 chr12:123323600-123332400 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr12:123323600-123340800 Weak transcription Rectal Smooth Muscle rectum
38 chr12:123323800-123325400 Genic enhancers Fetal Intestine Large intestine
39 chr12:123323800-123326000 Genic enhancers Pancreas Pancrea
40 chr12:123323800-123326400 Genic enhancers Duodenum Mucosa Duodenum
41 chr12:123323800-123326600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
42 chr12:123323800-123327600 Genic enhancers Fetal Intestine Small intestine
43 chr12:123323800-123329200 Weak transcription Primary T helper naive cells fromperipheralblood blood
44 chr12:123323800-123331000 Enhancers Stomach Mucosa stomach
45 chr12:123324000-123326200 Weak transcription Fetal Kidney kidney
46 chr12:123324000-123327400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr12:123324200-123326800 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr12:123324200-123327200 Strong transcription Primary B cells from cord blood blood
49 chr12:123324400-123325400 Genic enhancers Cortex derived primary cultured neurospheres brain
50 chr12:123324400-123325800 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015