Variant report

Variant	rs7540820
Chromosome Location	chr1:217306647-217306648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11579368	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11579388	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11584604	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11585011	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1393394	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1502351	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73107023	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217298200-217307000	Weak transcription	Fetal Heart	heart
2	chr1:217306400-217307400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:217306600-217307400	Weak transcription	Pancreas	Pancrea
4	chr1:217306600-217307800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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