Variant report

Variant	rs7541176
Chromosome Location	chr1:168818057-168818058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10918996	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs10919001	0.93[EUR][1000 genomes]
rs11808778	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12067686	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12078838	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12124937	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2143091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2143094	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4656618	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61801635	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7513850	0.89[EUR][1000 genomes]
rs7522431	0.86[EUR][1000 genomes]
rs7522451	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7522648	0.85[EUR][1000 genomes]
rs990128	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168817000-168818600	Enhancers	Fetal Brain Male	brain
2	chr1:168817200-168819200	Enhancers	Fetal Heart	heart
3	chr1:168817400-168818400	Enhancers	Fetal Muscle Leg	muscle
4	chr1:168817600-168818200	Enhancers	Fetal Brain Female	brain
5	chr1:168817600-168818200	Enhancers	Left Ventricle	heart
6	chr1:168817600-168818400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:168817600-168818400	Enhancers	Gastric	stomach
8	chr1:168817600-168818600	Enhancers	Esophagus	oesophagus
9	chr1:168817600-168818600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:168817800-168818400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:168817800-168818800	Enhancers	Brain Angular Gyrus	brain
12	chr1:168818000-168818600	Enhancers	Fetal Lung	lung
13	chr1:168818000-168818800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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