Variant report

Variant	rs75413736
Chromosome Location	chr3:24286322-24286323
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24285217..24287129-chr3:24288339..24291168,2	K562	blood:
2	chr3:24284818..24287512-chr3:24293603..24295471,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24268200-24291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24279600-24291400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:24283600-24297000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:24284200-24300600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24284400-24286400	Weak transcription	Aorta	Aorta
7	chr3:24284400-24295200	Weak transcription	Fetal Stomach	stomach
8	chr3:24284600-24295200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:24284600-24300400	Weak transcription	Pancreas	Pancrea
10	chr3:24284800-24286400	Weak transcription	Psoas Muscle	Psoas
11	chr3:24285000-24296200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:24285200-24286400	Weak transcription	Fetal Brain Male	brain
13	chr3:24285200-24299600	Weak transcription	Left Ventricle	heart
14	chr3:24285400-24294800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:24285600-24286400	Weak transcription	Brain Germinal Matrix	brain
16	chr3:24285600-24291000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:24285800-24286800	Enhancers	Adipose Nuclei	Adipose
18	chr3:24286200-24286400	Enhancers	Brain Anterior Caudate	brain
19	chr3:24286200-24286600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:24286200-24286600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:24286200-24286800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr3:24286200-24286800	Enhancers	HepG2	liver
23	chr3:24286200-24287000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links