Variant report

Variant	rs7542192
Chromosome Location	chr1:85671289-85671290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10159450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17122763	0.94[EUR][1000 genomes]
rs17122989	0.94[EUR][1000 genomes]
rs61752463	0.94[EUR][1000 genomes]
rs61756695	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85668000-85689000	Weak transcription	Gastric	stomach
2	chr1:85668400-85677800	Weak transcription	Right Atrium	heart
3	chr1:85668600-85672000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:85668600-85680800	Weak transcription	K562	blood
5	chr1:85668800-85672000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:85668800-85672000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:85668800-85672000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:85668800-85672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:85669000-85672000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:85670000-85672000	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:85670800-85679400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:85671200-85671800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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