Variant report

Variant	rs7542889
Chromosome Location	chr1:210759280-210759281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210547126..210548698-chr1:210757721..210760261,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35867665	1.00[EUR][1000 genomes]
rs4500318	1.00[MEX][hapmap]
rs6540605	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210752200-210761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210756200-210761000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
4	chr1:210756400-210760000	Weak transcription	Fetal Heart	heart
5	chr1:210757200-210761200	Weak transcription	HSMM	muscle
6	chr1:210758200-210759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:210758200-210760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:210758200-210761000	Weak transcription	Gastric	stomach
9	chr1:210758400-210759400	Weak transcription	Fetal Brain Male	brain
10	chr1:210758400-210759600	Weak transcription	Brain Angular Gyrus	brain
11	chr1:210758400-210759600	Weak transcription	Brain Germinal Matrix	brain
12	chr1:210758400-210759600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr1:210758400-210760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:210758400-210761000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:210758400-210761000	Weak transcription	Osteobl	bone
16	chr1:210758600-210759600	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:210758600-210759600	Weak transcription	Brain Substantia Nigra	brain
18	chr1:210758600-210760000	Weak transcription	Brain Anterior Caudate	brain
19	chr1:210758600-210760000	Weak transcription	HSMMtube	muscle
20	chr1:210758600-210763000	Weak transcription	A549	lung
21	chr1:210759200-210760800	Enhancers	Brain Cingulate Gyrus	brain

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