Variant report

Variant rs7543462
Chromosome Location chr1:159898913-159898914
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:159895800-159899000 Weak transcription H9 Cell Line embryonic stem cell
2 chr1:159895800-159899200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:159895800-159906600 Weak transcription Small Intestine intestine
4 chr1:159896000-159899000 Weak transcription Esophagus oesophagus
5 chr1:159896000-159899200 Weak transcription Gastric stomach
6 chr1:159896000-159906000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr1:159896200-159899600 Weak transcription Colonic Mucosa Colon
8 chr1:159896200-159906000 Genic enhancers Fetal Intestine Small intestine
9 chr1:159896400-159899000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:159896400-159901000 Weak transcription Fetal Thymus thymus
11 chr1:159896400-159902200 Strong transcription iPS-18 Cell Line embryonic stem cell
12 chr1:159896400-159906000 Weak transcription Rectal Smooth Muscle rectum
13 chr1:159896400-159906000 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:159896400-159906600 Weak transcription Right Atrium heart
15 chr1:159896600-159899400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr1:159896600-159900600 Genic enhancers Fetal Intestine Large intestine
17 chr1:159896600-159906000 Strong transcription H1 Cell Line embryonic stem cell
18 chr1:159896600-159906000 Strong transcription iPS-20b Cell Line embryonic stem cell
19 chr1:159896600-159907200 Weak transcription Fetal Heart heart
20 chr1:159896600-159908600 Weak transcription Fetal Kidney kidney
21 chr1:159896800-159899000 Strong transcription HUES48 Cell Line embryonic stem cell
22 chr1:159897000-159899000 Strong transcription Fetal Stomach stomach
23 chr1:159897000-159899800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:159897000-159902400 Strong transcription Brain Germinal Matrix brain
25 chr1:159897000-159906200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:159897000-159906200 Strong transcription Fetal Brain Female brain
27 chr1:159897200-159900800 Strong transcription Placenta Amnion Placenta Amnion
28 chr1:159897200-159902400 Weak transcription Spleen Spleen
29 chr1:159897200-159902600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:159897400-159905400 Strong transcription Liver Liver
31 chr1:159897800-159906400 Weak transcription Fetal Brain Male brain
32 chr1:159898000-159899200 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
33 chr1:159898000-159906000 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:159898000-159906000 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr1:159898200-159899000 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr1:159898200-159902600 Weak transcription GM12878-XiMat blood
37 chr1:159898200-159905800 Weak transcription A549 lung
38 chr1:159898400-159900200 Bivalent Enhancer Placenta Placenta
39 chr1:159898600-159899000 Genic enhancers NHEK skin
40 chr1:159898600-159899200 Flanking Active TSS HMEC breast
41 chr1:159898600-159899600 Weak transcription ES-WA7 Cell Line embryonic stem cell
42 chr1:159898600-159899800 Transcr. at gene 5' and 3' iPS DF 19.11 Cell Line embryonic stem cell
43 chr1:159898800-159899000 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
44 chr1:159898800-159899000 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr1:159898800-159899000 Enhancers Duodenum Mucosa Duodenum
46 chr1:159898800-159899200 Flanking Active TSS HUES6 Cell Line embryonic stem cell
47 chr1:159898800-159899200 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:159898800-159899200 Enhancers K562 blood
49 chr1:159898800-159899800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr1:159898800-159899800 Flanking Active TSS Pancreas Pancrea

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