Variant report

Variant	rs7544086
Chromosome Location	chr1:168994513-168994514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11810346	0.82[AFR][1000 genomes]
rs11811507	0.82[AFR][1000 genomes]
rs2982464	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs4142002	0.82[AFR][1000 genomes]
rs6658674	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168989400-168996600	Weak transcription	Stomach Mucosa	stomach
2	chr1:168991400-168997000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:168994000-168995000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:168994000-168995000	Enhancers	Fetal Intestine Large	intestine
5	chr1:168994000-168995000	Enhancers	Fetal Intestine Small	intestine
6	chr1:168994200-168994800	Enhancers	Psoas Muscle	Psoas
7	chr1:168994200-168994800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:168994200-168995000	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:168994200-168995000	Flanking Active TSS	GM12878-XiMat	blood
10	chr1:168994400-168994800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:168994400-168994800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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