Variant report

Variant	rs7544179
Chromosome Location	chr1:225620159-225620160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16844853	1.00[AFR][1000 genomes]
rs17558869	0.95[AMR][1000 genomes]
rs41267357	1.00[AFR][1000 genomes]
rs41268715	1.00[AFR][1000 genomes]
rs41304141	1.00[AFR][1000 genomes]
rs41314272	1.00[AFR][1000 genomes]
rs61738690	1.00[AFR][1000 genomes]
rs6679804	0.91[AMR][1000 genomes]
rs880434	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1004851	chr1:225614140-225684184	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225616600-225622800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:225617200-225621200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:225617200-225621200	Weak transcription	Thymus	Thymus
4	chr1:225617400-225626600	Weak transcription	Dnd41	blood
5	chr1:225618200-225621400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:225618400-225621200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:225618400-225621200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:225618400-225624600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:225619400-225621800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:225619600-225629000	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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