Variant report

Variant	rs7544284
Chromosome Location	chr1:47200061-47200062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47198906..47202020-chr1:47205382..47209037,4	K562	blood:

Variant related genes	Relation type
ENSG00000236476	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1258062	1.00[AMR][1000 genomes]
rs17102443	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2984805	1.00[AMR][1000 genomes]
rs58568840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs599869	1.00[AMR][1000 genomes]
rs635972	1.00[AMR][1000 genomes]
rs644675	1.00[AMR][1000 genomes]
rs654509	1.00[AMR][1000 genomes]
rs659308	1.00[AMR][1000 genomes]
rs682000	1.00[AMR][1000 genomes]
rs72886508	1.00[AMR][1000 genomes]
rs72886510	1.00[AMR][1000 genomes]
rs72886514	1.00[AMR][1000 genomes]
rs72898800	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900729	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900763	1.00[AMR][1000 genomes]
rs72900764	1.00[AMR][1000 genomes]
rs72900776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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