The 2.0 version of rSNPBase

Variant report

Variant rs7545066
Chromosome Location chr1:57163872-57163873
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:57122800-57169600 Weak transcription Ovary ovary
2 chr1:57125600-57169800 Weak transcription Aorta Aorta
3 chr1:57144200-57165000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr1:57144200-57171800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:57144400-57169400 Weak transcription Fetal Kidney kidney
6 chr1:57144400-57173600 Weak transcription Colon Smooth Muscle Colon
7 chr1:57149600-57166000 Weak transcription Right Ventricle heart
8 chr1:57150000-57165800 Weak transcription Left Ventricle heart
9 chr1:57150600-57168000 Weak transcription Stomach Smooth Muscle stomach
10 chr1:57151000-57165600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:57151400-57165400 Weak transcription Fetal Heart heart
12 chr1:57152400-57165800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:57154200-57174800 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr1:57154400-57166000 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:57154400-57169000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:57154400-57174600 Weak transcription Brain Anterior Caudate brain
17 chr1:57154400-57174800 Weak transcription Gastric stomach
18 chr1:57154600-57165200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:57154600-57169800 Weak transcription Fetal Intestine Large intestine
20 chr1:57154800-57165800 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:57154800-57166000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:57156600-57165800 Weak transcription Fetal Muscle Trunk muscle
23 chr1:57158400-57169000 Weak transcription Hela-S3 cervix
24 chr1:57158800-57166000 Weak transcription Fetal Muscle Leg muscle
25 chr1:57159000-57166000 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:57159200-57166600 Weak transcription Brain Germinal Matrix brain
27 chr1:57159600-57172800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:57159800-57174800 Weak transcription Fetal Stomach stomach
29 chr1:57160000-57174800 Weak transcription Brain Cingulate Gyrus brain
30 chr1:57160200-57174600 Weak transcription Fetal Brain Male brain
31 chr1:57160400-57165400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr1:57160400-57166000 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr1:57160400-57174800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:57160800-57165600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr1:57161400-57166000 Weak transcription Brain Hippocampus Middle brain
36 chr1:57162000-57165400 Weak transcription HepG2 liver
37 chr1:57162000-57165800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr1:57162200-57165400 Weak transcription Fetal Brain Female brain
39 chr1:57162400-57164200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr1:57162400-57165400 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr1:57162600-57165400 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:57162600-57169400 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:57162600-57169400 Weak transcription A549 lung
44 chr1:57162600-57174600 Weak transcription Brain Angular Gyrus brain
45 chr1:57162800-57176200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015