Variant report

Variant	rs7545555
Chromosome Location	chr1:85099435-85099436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85097469..85099752-chr1:85104402..85106141,3	K562	blood:
2	chr1:85097617..85099752-chr1:85104545..85106141,2	K562	blood:
3	chr1:85094114..85095940-chr1:85097671..85099703,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12125951	0.81[ASN][1000 genomes]
rs12127432	0.82[ASN][1000 genomes]
rs2911611	0.83[ASN][1000 genomes]
rs2943672	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85086800-85100000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:85087000-85147400	Weak transcription	Gastric	stomach
3	chr1:85096400-85101600	Enhancers	Fetal Intestine Large	intestine
4	chr1:85096400-85101600	Enhancers	Fetal Intestine Small	intestine
5	chr1:85097200-85101200	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:85098000-85100200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr1:85098000-85101400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:85098000-85101400	Enhancers	NHEK	skin
9	chr1:85098000-85101600	Enhancers	Placenta	Placenta
10	chr1:85098000-85101600	Enhancers	HMEC	breast
11	chr1:85098200-85100600	Weak transcription	Esophagus	oesophagus
12	chr1:85098400-85101400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:85098400-85101800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:85098600-85100200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:85098800-85100600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:85099000-85100400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:85099000-85100600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:85099000-85109600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:85099000-85115600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:85099000-85123400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:85099200-85099600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:85099200-85109200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:85099200-85109800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:85099200-85115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:85099200-85121400	Weak transcription	NHDF-Ad	bronchial
26	chr1:85099200-85138200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr1:85099400-85099800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:85099400-85099800	Weak transcription	Hela-S3	cervix
29	chr1:85099400-85105600	Weak transcription	K562	blood
30	chr1:85099400-85115000	Weak transcription	Osteobl	bone
31	chr1:85099400-85131200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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