Variant report

Variant	rs754619
Chromosome Location	chr10:44886090-44886091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:44886019-44886366	IMR90	lung:	n/a	chr10:44886190-44886201
2	CEBPB	chr10:44886067-44886325	K562	blood:	n/a	chr10:44886190-44886201
3	FOS	chr10:44886062-44886349	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr10:44886006-44886206	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr10:44886047-44886366	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr10:44886057-44886288	HepG2	liver:	n/a	chr10:44886190-44886201
7	HNF4A	chr10:44886039-44886353	HepG2	liver:	n/a	n/a
8	TEAD4	chr10:44885963-44886390	HepG2	liver:	n/a	n/a
9	E2F4	chr10:44885899-44886251	MCF10A-Er-Src	breast:	n/a	n/a
10	EP300	chr10:44886078-44886250	HepG2	liver:	n/a	n/a
11	CEBPB	chr10:44886070-44886276	HepG2	liver:	n/a	chr10:44886190-44886201
12	CEBPB	chr10:44886015-44886389	HepG2	liver:	n/a	chr10:44886190-44886201
13	CEBPB	chr10:44886029-44886357	A549	lung:	n/a	chr10:44886190-44886201

Variant related genes	Relation type
CXCL12	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11239027	0.88[ASN][1000 genomes]
rs17156117	1.00[AFR][1000 genomes]
rs17156170	1.00[AFR][1000 genomes]
rs736724	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44883800-44886200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44884200-44886800	Enhancers	Liver	Liver
3	chr10:44884800-44886400	Enhancers	Fetal Muscle Trunk	muscle
4	chr10:44885000-44886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:44885000-44886200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:44885200-44886200	Weak transcription	Pancreas	Pancrea
7	chr10:44885600-44886200	Enhancers	Fetal Lung	lung
8	chr10:44885600-44886400	Enhancers	Lung	lung
9	chr10:44885800-44886600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:44885800-44886600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:44885800-44886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44885800-44886600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:44885800-44886600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:44885800-44886600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:44885800-44886600	Enhancers	Osteobl	bone
16	chr10:44885800-44886800	Enhancers	HepG2	liver
17	chr10:44886000-44886200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:44886000-44886200	Enhancers	Aorta	Aorta
19	chr10:44886000-44886200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:44886000-44886400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:44886000-44886600	Enhancers	Adipose Nuclei	Adipose
22	chr10:44886000-44886600	Enhancers	Spleen	Spleen
23	chr10:44886000-44886600	Enhancers	NHDF-Ad	bronchial

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