Variant report

Variant	rs7547455
Chromosome Location	chr1:154371753-154371754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61812565	0.88[ASN][1000 genomes]
rs68138282	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
4	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
5	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154364400-154377200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:154367200-154374200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:154370000-154377200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:154370400-154375800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:154370800-154372600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:154371000-154372400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:154371000-154372600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:154371000-154374000	Weak transcription	HepG2	liver
9	chr1:154371000-154377200	Weak transcription	Adipose Nuclei	Adipose
10	chr1:154371200-154374000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:154371400-154372400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:154371400-154372400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr1:154371400-154374000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:154371600-154372000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:154371600-154372600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:154371600-154372800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:154371600-154372800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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