Variant report

Variant	rs7547579
Chromosome Location	chr1:90670232-90670233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10754299	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10922809	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10922810	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6428583	0.87[AMR][1000 genomes]
rs7553296	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830570	chr1:90525215-90685526	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90666000-90672200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:90669600-90670800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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