Variant report

Variant	rs75477817
Chromosome Location	chr10:28556257-28556258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28550629..28558294-chr10:28588558..28593348,8	MCF-7	breast:
2	chr10:28554682..28556486-chr10:28574647..28577127,2	MCF-7	breast:
3	chr10:28555334..28557134-chr10:28559032..28561052,2	K562	blood:
4	chr10:28554627..28557349-chr10:28572149..28574726,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv6199	chr10:28555515-28563204	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28550400-28582600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28550600-28562400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:28550600-28562600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:28550600-28563600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:28551400-28563600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:28552400-28557800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:28552800-28558200	Weak transcription	NHEK	skin
8	chr10:28552800-28559000	Weak transcription	Aorta	Aorta
9	chr10:28553000-28559200	Weak transcription	Fetal Stomach	stomach
10	chr10:28553000-28570800	Weak transcription	Esophagus	oesophagus
11	chr10:28553200-28557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:28553200-28568400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:28553400-28569600	Weak transcription	Pancreas	Pancrea
14	chr10:28553600-28558200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr10:28553800-28563400	Weak transcription	HepG2	liver
16	chr10:28554200-28557600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:28555600-28556400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:28555600-28556400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:28556000-28562200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:28556000-28563400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:28556200-28557800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr10:28556200-28563400	Weak transcription	Primary T cells from cord blood	blood
23	chr10:28556200-28563400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:28556200-28570800	Weak transcription	Primary B cells from cord blood	blood

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