Variant report

Variant	rs7547794
Chromosome Location	chr1:67031878-67031879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10493411	1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs10789211	0.89[JPT][hapmap]
rs10889629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208907	0.92[ASN][1000 genomes]
rs11208908	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11208910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11208916	0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11208924	0.80[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11208930	0.87[JPT][hapmap]
rs11208937	0.89[JPT][hapmap]
rs1156618	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023176	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12034344	0.98[ASN][1000 genomes]
rs12039282	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12041930	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12046520	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12117649	0.85[CEU][hapmap]
rs12565798	0.92[ASN][1000 genomes]
rs12567556	0.98[ASN][1000 genomes]
rs1373909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1445572	0.82[YRI][hapmap]
rs1838652	0.80[YRI][hapmap]
rs1925342	0.94[JPT][hapmap]
rs2312153	0.89[ASN][1000 genomes]
rs3795531	0.95[ASN][1000 genomes]
rs4655498	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4655620	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6588209	0.89[JPT][hapmap]
rs6588214	0.94[JPT][hapmap]
rs6680968	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6686606	0.83[JPT][hapmap]
rs6687137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6701907	0.94[JPT][hapmap]
rs6701988	0.98[ASN][1000 genomes]
rs7512692	0.83[ASN][1000 genomes]
rs7519639	0.92[ASN][1000 genomes]
rs7525509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7526812	0.94[JPT][hapmap]
rs7535076	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7537440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537454	0.83[YRI][hapmap]
rs7547857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551301	0.89[JPT][hapmap]
rs920987	0.86[YRI][hapmap]
rs963140	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1210	chr1:67017295-67033203	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67027200-67032000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:67029200-67033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:67029200-67042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:67029400-67040800	Weak transcription	Brain Anterior Caudate	brain
5	chr1:67029400-67041400	Weak transcription	Left Ventricle	heart
6	chr1:67029600-67041400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:67029600-67041600	Weak transcription	Aorta	Aorta
8	chr1:67029800-67032000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:67029800-67040200	Weak transcription	Fetal Heart	heart
10	chr1:67030000-67036400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:67030800-67032000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:67030800-67035600	Weak transcription	NH-A	brain
13	chr1:67030800-67036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:67030800-67037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:67030800-67037400	Weak transcription	HSMM	muscle
16	chr1:67031000-67035600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:67031000-67035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:67031000-67035600	Weak transcription	NHEK	skin
19	chr1:67031000-67036000	Weak transcription	HMEC	breast
20	chr1:67031000-67036000	Weak transcription	NHLF	lung
21	chr1:67031200-67036200	Weak transcription	Osteobl	bone
22	chr1:67031400-67032200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:67031400-67035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:67031400-67037400	Weak transcription	Hela-S3	cervix
25	chr1:67031600-67035600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr1:67031600-67035800	Weak transcription	NHDF-Ad	bronchial

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