Variant report

Variant	rs7548374
Chromosome Location	chr1:211867700-211867701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1067244	0.93[ASN][1000 genomes]
rs1067245	0.93[ASN][1000 genomes]
rs1067246	0.90[ASN][1000 genomes]
rs28767544	0.89[ASN][1000 genomes]
rs701916	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211859600-211868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211859600-211872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:211862000-211868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:211862200-211868000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:211862200-211868200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:211865200-211868000	Weak transcription	K562	blood
7	chr1:211865200-211868200	Weak transcription	HepG2	liver
8	chr1:211866600-211871800	Weak transcription	Right Atrium	heart
9	chr1:211867600-211868400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:211867600-211871800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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