The 2.0 version of rSNPBase

Variant report

Variant rs7549138
Chromosome Location chr1:172669849-172669850
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172655800-172673800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:172665200-172674200 Enhancers Primary T cells fromperipheralblood blood
3 chr1:172665200-172674200 Enhancers Primary Natural Killer cells fromperipheralblood blood
4 chr1:172665200-172675000 Enhancers Primary T helper naive cells fromperipheralblood blood
5 chr1:172665600-172672200 Enhancers Primary hematopoietic stem cells short term culture blood
6 chr1:172665800-172670600 Enhancers Dnd41 blood
7 chr1:172666000-172670000 Enhancers Primary hematopoietic stem cells blood
8 chr1:172666200-172670000 Enhancers GM12878-XiMat blood
9 chr1:172666200-172675600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:172667400-172673800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:172667400-172674600 Enhancers Primary T killer naive cells fromperipheralblood blood
12 chr1:172668600-172675000 Enhancers Primary T cells from cord blood blood
13 chr1:172669000-172673000 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr1:172669200-172670200 Enhancers Primary T helper naive cells from peripheral blood blood
15 chr1:172669200-172671200 Weak transcription Duodenum Mucosa Duodenum
16 chr1:172669200-172673000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
17 chr1:172669200-172673000 Enhancers Primary T helper cells PMA-I stimulated --
18 chr1:172669200-172673000 Enhancers Primary T killer memory cells from peripheral blood blood
19 chr1:172669200-172674400 Enhancers Primary T regulatory cells fromperipheralblood blood
20 chr1:172669200-172674600 Enhancers Primary T helper cells fromperipheralblood blood
21 chr1:172669400-172671200 Weak transcription HMEC breast
22 chr1:172669400-172673400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr1:172669400-172673400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:172669400-172674400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr1:172669400-172679000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr1:172669600-172670400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:172669600-172671200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:172669600-172671800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:172669600-172672800 Enhancers Primary T helper 17 cells PMA-I stimulated --
30 chr1:172669600-172673200 Weak transcription Primary monocytes fromperipheralblood blood
31 chr1:172669600-172673400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:172669600-172673600 Weak transcription Primary B cells from peripheral blood blood
33 chr1:172669800-172670400 Weak transcription Fetal Thymus thymus

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Last update: Aug 31, 2015