Variant report

Variant	rs7549772
Chromosome Location	chr1:160561248-160561249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10797078	0.82[AMR][1000 genomes]
rs10908787	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10908788	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10908790	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10908793	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11265436	0.82[AMR][1000 genomes]
rs11265438	0.82[AMR][1000 genomes]
rs11265445	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11265446	0.85[AMR][1000 genomes]
rs11265447	0.84[AFR][1000 genomes]
rs12128290	0.84[AMR][1000 genomes]
rs1408597	0.81[AMR][1000 genomes]
rs1466933	0.82[AMR][1000 genomes]
rs1503846	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1503856	0.82[AMR][1000 genomes]
rs1553458	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1590450	0.87[AMR][1000 genomes]
rs1604784	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2134705	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2369721	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2369723	0.87[AMR][1000 genomes]
rs6427536	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6427537	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6657941	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6659814	0.87[AMR][1000 genomes]
rs6668881	0.87[AMR][1000 genomes]
rs724985	0.87[AMR][1000 genomes]
rs7413789	0.81[AMR][1000 genomes]
rs7519913	0.85[AMR][1000 genomes]
rs7522715	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7543788	0.87[AMR][1000 genomes]
rs7555826	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160555600-160575200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:160558000-160575400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:160559400-160561400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:160559400-160561600	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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