Variant report

Variant	rs7550614
Chromosome Location	chr1:161071626-161071627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161066775..161076749-chr1:161082263..161091955,20	K562	blood:
2	chr1:161064725..161068388-chr1:161069127..161071844,3	MCF-7	breast:
3	chr1:161067905..161072134-chr1:161127935..161131211,3	MCF-7	breast:
4	chr1:161066559..161072259-chr1:161099379..161104380,9	MCF-7	breast:
5	chr1:161070744..161074302-chr1:161079328..161081815,3	K562	blood:
6	chr1:161063446..161066322-chr1:161070095..161071635,2	MCF-7	breast:
7	chr1:161068061..161070264-chr1:161070552..161072269,3	MCF-7	breast:
8	chr1:161070493..161072800-chr1:161086223..161087955,2	K562	blood:
9	chr1:161067105..161072149-chr1:161083038..161089689,9	MCF-7	breast:
10	chr1:161004558..161008526-chr1:161070712..161072835,3	MCF-7	breast:
11	chr1:161071491..161074470-chr1:161101056..161103371,2	K562	blood:
12	chr1:161070211..161073021-chr1:161084207..161086121,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143258	Chromatin interaction
ENSG00000158796	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000232879	Chromatin interaction
ENSG00000158793	Chromatin interaction
ENSG00000143256	Chromatin interaction
ENSG00000224985	Chromatin interaction
ENSG00000215845	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12063241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301288	0.90[EUR][1000 genomes]
rs3813621	0.90[EUR][1000 genomes]
rs41270043	0.90[EUR][1000 genomes]
rs59486558	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161068400-161081800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:161068600-161081200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:161068800-161071800	Weak transcription	NHLF	lung
4	chr1:161068800-161085200	Weak transcription	Right Atrium	heart
5	chr1:161068800-161085600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:161068800-161087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:161069000-161072200	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr1:161069000-161072200	Strong transcription	Right Ventricle	heart
9	chr1:161069000-161072200	Strong transcription	Thymus	Thymus
10	chr1:161069000-161072400	Strong transcription	Primary T cells from cord blood	blood
11	chr1:161069000-161072400	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:161069000-161072400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:161069000-161072400	Strong transcription	HSMMtube	muscle
14	chr1:161069000-161073000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:161069000-161073400	Strong transcription	Placenta	Placenta
16	chr1:161069000-161074400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:161069000-161076400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:161069000-161083600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:161069000-161085200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:161069000-161086800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:161069200-161072000	Genic enhancers	Adipose Nuclei	Adipose
22	chr1:161069200-161072200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr1:161069200-161072200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:161069200-161072400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr1:161069200-161072400	Strong transcription	Fetal Intestine Large	intestine
26	chr1:161069200-161072600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:161069200-161072600	Strong transcription	Brain Germinal Matrix	brain
28	chr1:161069200-161072600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:161069200-161073000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:161069200-161073000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:161069200-161073000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:161069200-161073000	Strong transcription	Fetal Stomach	stomach
33	chr1:161069200-161073400	Strong transcription	Primary B cells from cord blood	blood
34	chr1:161069200-161073800	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr1:161069200-161074200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:161069200-161074200	Strong transcription	NHEK	skin
37	chr1:161069200-161076800	Strong transcription	K562	blood
38	chr1:161069200-161086400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr1:161069400-161072200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:161069400-161072200	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:161069400-161072400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:161069400-161072400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:161069400-161072400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:161069400-161072400	Strong transcription	Fetal Intestine Small	intestine
45	chr1:161069400-161072400	Strong transcription	Osteobl	bone
46	chr1:161069400-161072600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr1:161069400-161072600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:161069400-161072600	Strong transcription	Liver	Liver
49	chr1:161069400-161073000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr1:161069400-161073000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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