Variant report

Variant	rs7550826
Chromosome Location	chr1:157993461-157993462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7527643	0.87[YRI][hapmap]
rs7527746	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:157984400-157995400	Weak transcription	Fetal Brain Female	brain
3	chr1:157985200-157995000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:157985200-158006000	Weak transcription	Fetal Thymus	thymus
5	chr1:157987200-157996400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:157987800-157993600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:157988400-157993600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:157989400-158007400	Weak transcription	Gastric	stomach
9	chr1:157989800-157993800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:157990000-157993800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:157990000-157994600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:157990000-157996400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:157991200-157994600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:157991200-157994600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:157991200-157996600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:157991400-157993600	Enhancers	Osteobl	bone
17	chr1:157991400-157996200	Enhancers	NHDF-Ad	bronchial
18	chr1:157991400-157997000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:157991400-158000400	Weak transcription	Fetal Intestine Large	intestine
20	chr1:157991800-157995000	Weak transcription	Stomach Mucosa	stomach
21	chr1:157991800-158002200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:157991800-158007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:157992000-157994400	Weak transcription	Small Intestine	intestine
24	chr1:157992000-157999200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:157992200-157993600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:157992200-157995200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr1:157992200-157995600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:157992200-157996200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:157992600-157994400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:157992600-157996400	Genic enhancers	NHLF	lung
31	chr1:157992800-157995200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:157992800-158000600	Weak transcription	Thymus	Thymus
33	chr1:157993000-157993600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr1:157993000-157993800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr1:157993000-157994200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:157993000-157994200	Weak transcription	Right Atrium	heart
37	chr1:157993000-157994400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:157993000-157994400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:157993000-157994400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:157993000-157994400	Weak transcription	Aorta	Aorta
41	chr1:157993000-157994400	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:157993000-157994400	Weak transcription	Fetal Heart	heart
43	chr1:157993000-157994400	Weak transcription	Left Ventricle	heart
44	chr1:157993000-157994400	Weak transcription	Ovary	ovary
45	chr1:157993000-157994400	Weak transcription	HSMM	muscle
46	chr1:157993000-157994400	Weak transcription	NH-A	brain
47	chr1:157993000-157994600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:157993000-157994600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr1:157993000-157994600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr1:157993000-157994800	Weak transcription	H1 Cell Line	embryonic stem cell

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