Variant report

Variant	rs7551161
Chromosome Location	chr1:151796320-151796321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151795791..151798042-chr1:151801058..151802708,2	K562	blood:
2	chr1:151795588..151797929-chr1:151801830..151803659,3	MCF-7	breast:
3	chr1:151786405..151788283-chr1:151795067..151797465,2	MCF-7	breast:
4	chr1:151762692..151764712-chr1:151794747..151796682,2	MCF-7	breast:
5	chr1:151789315..151792282-chr1:151793123..151796667,3	MCF-7	breast:
6	chr1:151795525..151798477-chr1:151809091..151811611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182134	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000143365	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10788811	1.00[AMR][1000 genomes]
rs2338205	1.00[AMR][1000 genomes]
rs2999521	1.00[AMR][1000 genomes]
rs2999557	1.00[AMR][1000 genomes]
rs3007675	1.00[AMR][1000 genomes]
rs3007683	1.00[AMR][1000 genomes]
rs3007715	1.00[AMR][1000 genomes]
rs6678962	1.00[AMR][1000 genomes]
rs7551489	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516369	chr1:151780177-151820324	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1804657	chr1:151784152-151825756	Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv160848	chr1:151789609-151796769	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151778600-151802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151787400-151800000	Weak transcription	Spleen	Spleen
3	chr1:151788200-151796800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
4	chr1:151790000-151799000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:151790200-151801600	Weak transcription	Right Atrium	heart
6	chr1:151791000-151800600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:151793000-151800600	Weak transcription	Lung	lung
8	chr1:151793400-151800200	Weak transcription	Gastric	stomach
9	chr1:151793600-151800800	Weak transcription	Stomach Mucosa	stomach
10	chr1:151793600-151801000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:151793800-151797600	Weak transcription	Adipose Nuclei	Adipose
12	chr1:151793800-151797600	Weak transcription	Psoas Muscle	Psoas
13	chr1:151793800-151797600	Weak transcription	Right Ventricle	heart
14	chr1:151794000-151798200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:151794000-151798400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:151794000-151798600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:151794400-151797400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
18	chr1:151794600-151797800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr1:151794600-151798800	Weak transcription	Hela-S3	cervix
20	chr1:151794800-151797000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:151794800-151798200	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr1:151795000-151797800	Transcr. at gene 5' and 3'	Thymus	Thymus
23	chr1:151795000-151798600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:151795200-151796400	Weak transcription	Primary T cells from cord blood	blood
25	chr1:151795200-151796600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:151795200-151799800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr1:151795400-151796400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:151795400-151796600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:151795400-151796800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:151795400-151797000	Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr1:151795400-151797000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:151795400-151797600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:151795400-151797800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr1:151795400-151798000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:151795400-151798000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:151795400-151798200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:151795400-151800400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:151795400-151800600	Weak transcription	GM12878-XiMat	blood
39	chr1:151795600-151798000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:151795600-151798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr1:151795600-151801800	Genic enhancers	Liver	Liver
42	chr1:151795800-151796400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr1:151795800-151796400	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:151795800-151796600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:151796000-151796800	Enhancers	Dnd41	blood
46	chr1:151796000-151797000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:151796000-151797400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr1:151796000-151797600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr1:151796000-151798200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr1:151796000-151800600	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links