Variant report

Variant	rs7551401
Chromosome Location	chr1:84763507-84763508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr1:84763478-84765252	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84763327..84765739-chr1:84765755..84771723,8	K562	blood:

Variant related genes	Relation type
SAMD13	TF binding region
ENSG00000203943	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11810469	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830414	chr1:84636738-84824651	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84753800-84764000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:84758000-84763800	Weak transcription	NHLF	lung
3	chr1:84761600-84763600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:84762000-84766000	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr1:84762400-84765800	Active TSS	Rectal Smooth Muscle	rectum
6	chr1:84762600-84763600	Weak transcription	Fetal Kidney	kidney
7	chr1:84762600-84763600	Enhancers	Stomach Mucosa	stomach
8	chr1:84762600-84765600	Active TSS	Duodenum Mucosa	Duodenum
9	chr1:84762600-84765800	Active TSS	Colonic Mucosa	Colon
10	chr1:84762800-84763600	Enhancers	Primary T cells from cord blood	blood
11	chr1:84762800-84763600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:84762800-84763600	Enhancers	Fetal Heart	heart
13	chr1:84762800-84764800	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr1:84763000-84765800	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr1:84763200-84763600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:84763200-84763600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:84763200-84763800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:84763200-84763800	Enhancers	Fetal Thymus	thymus
19	chr1:84763200-84764000	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr1:84763200-84764000	Flanking Active TSS	Dnd41	blood
21	chr1:84763200-84765200	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr1:84763200-84765200	Active TSS	Gastric	stomach
23	chr1:84763200-84769400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:84763400-84763600	Enhancers	Primary B cells from cord blood	blood
25	chr1:84763400-84763600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr1:84763400-84763600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr1:84763400-84763600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr1:84763400-84763600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr1:84763400-84763600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:84763400-84763600	Enhancers	Lung	lung
31	chr1:84763400-84763600	Enhancers	Thymus	Thymus
32	chr1:84763400-84763600	Enhancers	Hela-S3	cervix
33	chr1:84763400-84763800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:84763400-84763800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr1:84763400-84763800	Enhancers	Primary hematopoietic stem cells	blood
36	chr1:84763400-84763800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr1:84763400-84763800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr1:84763400-84763800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr1:84763400-84763800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr1:84763400-84763800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr1:84763400-84763800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:84763400-84763800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:84763400-84763800	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr1:84763400-84763800	Enhancers	Psoas Muscle	Psoas
45	chr1:84763400-84763800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr1:84763400-84764000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:84763400-84764000	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr1:84763400-84764000	Flanking Active TSS	Brain Cingulate Gyrus	brain
49	chr1:84763400-84764000	Flanking Active TSS	HUVEC	blood vessel
50	chr1:84763400-84765000	Active TSS	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links