Variant report

Variant	rs755149
Chromosome Location	chr20:41692255-41692256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs206148	0.84[JPT][hapmap];0.85[TSI][hapmap]
rs206151	0.84[JPT][hapmap]
rs206152	0.84[JPT][hapmap]
rs206153	0.84[JPT][hapmap]
rs206154	0.84[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs206155	0.89[JPT][hapmap]
rs206159	0.89[JPT][hapmap];0.85[TSI][hapmap]
rs206163	0.83[JPT][hapmap]
rs2208048	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs2208049	0.83[AMR][1000 genomes]
rs2224259	0.82[AMR][1000 genomes]
rs2425544	0.89[JPT][hapmap]
rs2425546	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs2425553	0.83[JPT][hapmap];0.85[TSI][hapmap]
rs2425554	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs2425556	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs2425559	0.89[JPT][hapmap]
rs2425560	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs2425561	0.83[JPT][hapmap]
rs2425562	0.83[JPT][hapmap]
rs2425563	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs2425564	0.83[JPT][hapmap]
rs2425566	0.83[JPT][hapmap]
rs2425568	0.83[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes]
rs2425576	0.85[ASN][1000 genomes]
rs2425577	0.86[ASN][1000 genomes]
rs2425578	0.99[ASN][1000 genomes]
rs2425579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3091443	0.83[JPT][hapmap]
rs3091800	0.83[JPT][hapmap]
rs3092095	0.82[JPT][hapmap]
rs3092117	0.83[JPT][hapmap]
rs3092177	0.83[JPT][hapmap]
rs3092179	0.85[ASN][1000 genomes]
rs3092292	0.83[JPT][hapmap];0.89[TSI][hapmap]
rs3092328	0.83[JPT][hapmap]
rs3092500	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4444608	0.83[JPT][hapmap]
rs6016946	0.83[JPT][hapmap]
rs6030610	0.81[JPT][hapmap]
rs6030612	0.83[JPT][hapmap]
rs6030613	0.83[JPT][hapmap]
rs714972	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs755148	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs910829	0.83[JPT][hapmap]
rs910830	0.83[JPT][hapmap]
rs985693	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060468	chr20:41518010-41700012	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061053	chr20:41521471-41704874	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv949221	chr20:41594025-41742176	Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv869774	chr20:41595567-41746533	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2762078	chr20:41598181-41745491	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv948829	chr20:41598995-41742176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1065908	chr20:41620966-41735969	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41674000-41700600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:41688600-41694200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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