Variant report
| Variant | rs7552391 |
|---|---|
| Chromosome Location | chr1:184221636-184221637 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:184211688..184213788-chr1:184219586..184222091,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10158834 | 0.80[ASN][1000 genomes] |
| rs10494579 | 0.95[ASN][1000 genomes] |
| rs1111087 | 0.95[ASN][1000 genomes] |
| rs12079075 | 0.87[ASN][1000 genomes] |
| rs12079081 | 0.87[ASN][1000 genomes] |
| rs13375618 | 0.95[ASN][1000 genomes] |
| rs13375785 | 0.95[ASN][1000 genomes] |
| rs16822649 | 0.95[ASN][1000 genomes] |
| rs16822650 | 0.95[ASN][1000 genomes] |
| rs16822722 | 0.95[ASN][1000 genomes] |
| rs16822757 | 0.95[ASN][1000 genomes] |
| rs16822764 | 0.95[ASN][1000 genomes] |
| rs16822783 | 0.95[ASN][1000 genomes] |
| rs16822793 | 0.95[ASN][1000 genomes] |
| rs16822804 | 0.87[ASN][1000 genomes] |
| rs1810915 | 0.95[ASN][1000 genomes] |
| rs1930289 | 0.95[ASN][1000 genomes] |
| rs2161987 | 0.95[ASN][1000 genomes] |
| rs4354502 | 0.95[ASN][1000 genomes] |
| rs4543760 | 0.95[ASN][1000 genomes] |
| rs56797986 | 0.95[ASN][1000 genomes] |
| rs57904419 | 0.87[ASN][1000 genomes] |
| rs58386684 | 0.87[ASN][1000 genomes] |
| rs59737381 | 0.95[ASN][1000 genomes] |
| rs59786945 | 0.91[ASN][1000 genomes] |
| rs59949779 | 0.95[ASN][1000 genomes] |
| rs60179616 | 0.87[ASN][1000 genomes] |
| rs60877351 | 0.83[ASN][1000 genomes] |
| rs6656900 | 1.00[ASN][1000 genomes] |
| rs6680645 | 0.83[ASN][1000 genomes] |
| rs73057576 | 0.95[ASN][1000 genomes] |
| rs73057582 | 1.00[ASN][1000 genomes] |
| rs73057595 | 0.95[ASN][1000 genomes] |
| rs73057598 | 0.95[ASN][1000 genomes] |
| rs73059524 | 0.95[ASN][1000 genomes] |
| rs73059529 | 0.95[ASN][1000 genomes] |
| rs73059544 | 0.95[ASN][1000 genomes] |
| rs73059563 | 0.87[ASN][1000 genomes] |
| rs7543951 | 0.95[ASN][1000 genomes] |
| rs755483 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530079 | chr1:183797938-184639971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:184212000-184222200 | Weak transcription | Fetal Heart | heart |
| 2 | chr1:184212200-184229400 | Weak transcription | NHLF | lung |
