Variant report

Variant	rs7552710
Chromosome Location	chr1:169758023-169758024
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169751762..169754671-chr1:169756355..169758348,3	K562	blood:
2	chr1:169753568..169755601-chr1:169755944..169758258,2	MCF-7	breast:
3	chr1:169757678..169760547-chr22:21995645..21997471,2	K562	blood:
4	chr1:169755971..169761352-chr1:169761713..169764832,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171806	Chromatin interaction
ENSG00000128228	Chromatin interaction
ENSG00000000460	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159425	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10489170	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10489177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10753796	0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10800477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800482	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10919243	0.84[CHB][hapmap]
rs10919260	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[EUR][1000 genomes]
rs10919270	0.85[CEU][hapmap]
rs10919271	0.87[CEU][hapmap]
rs10919272	0.85[CEU][hapmap]
rs11804170	0.87[CEU][hapmap]
rs12049325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12124607	0.82[CEU][hapmap]
rs12128754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12135656	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs12135826	0.95[EUR][1000 genomes]
rs12138675	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12401338	0.81[EUR][1000 genomes]
rs12760433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143121	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2272916	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35275808	0.80[EUR][1000 genomes]
rs3753311	0.83[CHB][hapmap]
rs6427223	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6658548	0.95[EUR][1000 genomes]
rs6670253	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6679646	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6688806	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7514634	0.82[CEU][hapmap]
rs7533194	0.81[EUR][1000 genomes]
rs882595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9787237	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169749400-169761400	Weak transcription	Liver	Liver
2	chr1:169750800-169762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:169751600-169760200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:169751600-169762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:169752600-169760200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:169753600-169763000	Weak transcription	HMEC	breast
7	chr1:169754400-169760800	Weak transcription	Dnd41	blood
8	chr1:169755000-169760000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:169756400-169761000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:169756400-169762400	Weak transcription	Fetal Brain Male	brain
11	chr1:169756600-169762600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:169757000-169762400	Weak transcription	Fetal Thymus	thymus
13	chr1:169757200-169758400	Enhancers	HepG2	liver
14	chr1:169757400-169763000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:169757400-169763000	Weak transcription	Thymus	Thymus
16	chr1:169757400-169763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:169757600-169762200	Weak transcription	Fetal Intestine Small	intestine
18	chr1:169757600-169763000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:169757800-169760000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:169758000-169762800	Weak transcription	Primary B cells from cord blood	blood

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