Variant report

Variant	rs7553173
Chromosome Location	chr1:216978821-216978822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:216978734-216978964	MCF10A-Er-Src	breast:	n/a	chr1:216978796-216978805 chr1:216978894-216978905
2	STAT3	chr1:216978577-216978831	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr1:216978630-216978931	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr1:216978649-216978915	IMR90	lung:	n/a	n/a
5	KAP1	chr1:216978464-216979031	U2OS	brain:	n/a	n/a
6	MYC	chr1:216978718-216979055	MCF10A-Er-Src	breast:	n/a	chr1:216978796-216978805 chr1:216978894-216978905

Variant related genes	Relation type
ESRRG	TF binding region

rs_ID	r²[population]
rs10218758	0.82[JPT][hapmap]
rs10458464	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12025686	0.92[ASN][1000 genomes]
rs12146000	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12562082	0.93[AFR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216976000-216979000	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr1:216976800-216979000	Active TSS	Psoas Muscle	Psoas
3	chr1:216977200-216980000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:216977200-216980200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:216977400-216979400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:216977400-216980200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:216978000-216979800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:216978200-216979000	Active TSS	Brain Hippocampus Middle	brain
9	chr1:216978400-216979000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:216978400-216979000	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr1:216978400-216979000	Active TSS	Brain Substantia Nigra	brain
12	chr1:216978400-216979000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr1:216978400-216979200	Active TSS	Brain Cingulate Gyrus	brain
14	chr1:216978400-216979400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:216978400-216979400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:216978400-216979600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:216978600-216979000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:216978600-216979000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:216978600-216979000	Active TSS	Brain Angular Gyrus	brain
20	chr1:216978600-216979000	Enhancers	HSMMtube	muscle
21	chr1:216978600-216979200	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr1:216978600-216979400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr1:216978600-216979600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr1:216978600-216979600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:216978600-216979600	Enhancers	H9 Cell Line	embryonic stem cell
26	chr1:216978600-216980200	Enhancers	Fetal Muscle Leg	muscle
27	chr1:216978600-216980400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr1:216978800-216979000	Flanking Active TSS	NHEK	skin
29	chr1:216978800-216979200	Flanking Active TSS	Fetal Heart	heart
30	chr1:216978800-216979800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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