Variant report

Variant	rs755320
Chromosome Location	chr8:11423439-11423440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11422187..11423813-chr8:11429710..11432078,2	MCF-7	breast:
2	chr8:11422237..11424811-chr8:11602615..11604781,2	MCF-7	breast:
3	chr8:11422289..11424857-chr8:11598109..11600598,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093575	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10094362	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774549	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11776081	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11779184	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786268	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127128	0.85[CHD][hapmap]
rs2250986	1.00[JPT][hapmap]
rs2306234	0.85[CHD][hapmap]
rs28604385	0.83[ASN][1000 genomes]
rs4841565	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62490880	1.00[ASN][1000 genomes]
rs62490881	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490888	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490890	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490891	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490892	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490893	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197313	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732947	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs746411	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7814414	0.85[ASN][1000 genomes]
rs899366	0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv520117	chr8:11391650-11429147	Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv465466	chr8:11391650-11429147	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv610289	chr8:11391650-11429147	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv465467	chr8:11391650-11430485	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv610290	chr8:11391650-11430485	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv2761407	chr8:11392880-11429147	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1029589	chr8:11392880-11429147	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1026837	chr8:11394466-11464127	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv1018959	chr8:11395232-11455756	Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv890358	chr8:11396856-11448738	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv1033629	chr8:11401789-11466745	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv523827	chr8:11408401-11486220	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1032195	chr8:11420541-11480692	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv1016749	chr8:11422571-11466745	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs755320	FLJ10661	cis	cerebellum	SCAN
rs755320	DEFB134	cis	cerebellum	SCAN
rs755320	TDH	cis	cerebellum	SCAN
rs755320	PRSS55	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11422200-11423800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:11422200-11423800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:11422400-11424600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:11422600-11423600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
5	chr8:11422600-11423800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:11422600-11424800	Weak transcription	Ovary	ovary
7	chr8:11422600-11424800	Weak transcription	HSMM	muscle
8	chr8:11422600-11424800	Weak transcription	HSMMtube	muscle
9	chr8:11422600-11425200	Enhancers	HMEC	breast
10	chr8:11422600-11429600	Weak transcription	Right Atrium	heart
11	chr8:11422800-11423600	Weak transcription	HUVEC	blood vessel
12	chr8:11422800-11423800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:11422800-11425000	Enhancers	A549	lung
14	chr8:11422800-11429000	Weak transcription	Pancreas	Pancrea
15	chr8:11423000-11423800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:11423000-11424400	Weak transcription	Fetal Heart	heart
17	chr8:11423000-11424400	Bivalent Enhancer	HepG2	liver
18	chr8:11423000-11425000	Weak transcription	Left Ventricle	heart
19	chr8:11423200-11424600	Weak transcription	GM12878-XiMat	blood
20	chr8:11423200-11424800	Weak transcription	Right Ventricle	heart
21	chr8:11423200-11425600	Enhancers	Primary B cells from peripheral blood	blood
22	chr8:11423400-11423800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chr8:11423400-11423800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr8:11423400-11424000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:11423400-11424200	Weak transcription	Primary B cells from cord blood	blood
26	chr8:11423400-11424200	Enhancers	Hela-S3	cervix
27	chr8:11423400-11425200	Enhancers	NH-A	brain

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