Variant report

Variant	rs75533933
Chromosome Location	chr19:44584960-44584961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44583811..44585821-chr19:44587425..44590403,2	MCF-7	breast:
2	chr19:44583300..44585614-chr19:44596665..44599577,2	K562	blood:

Variant related genes	Relation type
ENSG00000267680	Chromatin interaction
ENSG00000253021	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv978827	chr19:44584843-44590122	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44577000-44585000	Weak transcription	Pancreas	Pancrea
2	chr19:44577000-44598000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44577200-44585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:44577200-44585000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:44577200-44585000	Weak transcription	Colonic Mucosa	Colon
6	chr19:44577200-44585000	Weak transcription	Esophagus	oesophagus
7	chr19:44577200-44586200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:44577200-44586200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr19:44577200-44586200	Weak transcription	HUVEC	blood vessel
10	chr19:44577200-44588000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:44577200-44588200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:44577200-44590000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:44577200-44598000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr19:44577400-44585000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr19:44577400-44585000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr19:44577400-44585000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr19:44577400-44585000	Weak transcription	Small Intestine	intestine
18	chr19:44577400-44585200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr19:44577400-44586200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:44577400-44586400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr19:44577400-44589200	Weak transcription	NH-A	brain
22	chr19:44577600-44585000	Weak transcription	Gastric	stomach
23	chr19:44577600-44585000	Weak transcription	Psoas Muscle	Psoas
24	chr19:44577600-44585400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr19:44577600-44586000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr19:44577600-44586000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr19:44577600-44586000	Weak transcription	NHDF-Ad	bronchial
28	chr19:44577600-44586200	Weak transcription	Fetal Brain Male	brain
29	chr19:44577600-44586400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr19:44577600-44587800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr19:44577600-44588400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr19:44577600-44589800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr19:44577600-44597800	Weak transcription	HMEC	breast
34	chr19:44577800-44586400	Weak transcription	NHEK	skin
35	chr19:44577800-44586600	Weak transcription	HepG2	liver
36	chr19:44580600-44591400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr19:44580600-44592400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:44580600-44592600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr19:44580800-44593200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr19:44581000-44591400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr19:44581000-44591400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr19:44581000-44591800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:44581200-44585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr19:44581200-44591400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr19:44581200-44591600	Strong transcription	Dnd41	blood
46	chr19:44581200-44592400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr19:44581200-44593000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr19:44581400-44591000	Strong transcription	Fetal Intestine Large	intestine
49	chr19:44581600-44586000	Weak transcription	Primary B cells from cord blood	blood
50	chr19:44581600-44586200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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